¶ Ontology
GlycoRDF : https://bioportal.bioontology.org/ontologies/GLYCORDF
| Prefix | Namespace |
|---|---|
| rdf | http://www.w3.org/1999/02/22-rdf-syntax-ns# |
| rdfs | http://www.w3.org/2000/01/rdf-schema# |
| xsd | http://www.w3.org/2001/XMLSchema# |
| glycan | http://purl.jp/bio/12/glyco/glycan# |
| glytoucan | http://www.glytoucan.org/glyco/owl/glytoucan# |
¶ Endpoint
https://ts.glytoucan.org/sparql
¶ GRAPHs
The GlyTouCan RDF consists of multiple Named GRAPHs.
| Graph Name | URI | Description |
|---|---|---|
| Core graph | http://rdf.glytoucan.org/core |
GlyTouCan accession number and a submitted date |
| WURCS graph | http://rdf.glytoucan.org/sequence/wurcs |
WURCS sequence data |
| Archetype graph | http://rdf.glytoucan.org/archetype |
Archetype data |
| Archive graph | http://rdf.glytoucan.org/archive |
Archived GlyTouCan accession number |
¶ Core graph
URI : http://rdf.glytoucan.org/core
RDF (turtle format)
@prefix rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> .
@prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> .
@prefix xsd: <http://www.w3.org/2001/XMLSchema#> .
@prefix glycan: <http://purl.jp/bio/12/glyco/glycan#> .
@prefix glytoucan: <http://www.glytoucan.org/glyco/owl/glytoucan#> .
<http://rdf.glycoinfo.org/glycan/G19529BG>
rdf:type glycan:Saccharide ;
glycan:has_resource_entry <http://rdf.glycoinfo.org/resource-entry/G19529BG> ;
glytoucan:has_primary_id "G19529BG" .
<http://rdf.glycoinfo.org/resource-entry/G19529BG>
rdf:type glycan:Resource_entry ;
rdfs:seeAlso <http://glytoucan.org/Structures/Glycans/G19529BG> ;
glytoucan:date_registered "2014-10-31T16:00:57.410+09:00"^^xsd:dateTime ;
glytoucan:date_archived "2022-03-09T10:48:26.538591+09:00"^^xsd:dateTime ;
glytoucan:status "archived/active" .
¶ WURCS graph
URI : http://rdf.glytoucan.org/sequence/wurcs
RDF (turtle format)
@prefix rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> .
@prefix glycan: <http://purl.jp/bio/12/glyco/glycan#> .
<http://rdf.glycoinfo.org/glycan/G17266GE>
glycan:has_glycosequence <http://rdf.glycoinfo.org/glycan/G17266GE/wurcs/2.0> .
<http://rdf.glycoinfo.org/glycan/G17266GE/wurcs/2.0>
rdf:type glycan:Glycosequence ;
glycan:has_sequence "WURCS=2.0/4,7,6/[a2122h-1b_1-5_2*NCC/3=O][a1221m-1a_1-5][a1122h-1b_1-5][a1122h-1a_1-5]/1-2-1-2-3-4-2/a3-b1_a4-c1_a6-g1_c3-d1_c4-e1_e3-f1" ;
glycan:in_carbohydrate_format glycan:carbohydrate_format_wurcs .
¶ Archetype graph
URI : http://rdf.glytoucan.org/archetype
¶ glycan:is_archetype_of
RDF (turtle format)
@prefix rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> .
@prefix glycan: <http://purl.jp/bio/12/glyco/glycan#> .
<http://rdf.glycoinfo.org/glycan/G92954UT>
rdf:type glycan:archetype ;
glycan:is_archetype_of <http://rdf.glycoinfo.org/G46516IR> ;
<http://rdf.glycoinfo.org/G56546AC> ;
<http://rdf.glycoinfo.org/G21381MC> ;
<http://rdf.glycoinfo.org/G92954UT> .
¶ glycan:has_archetype
RDF (turtle format)
@prefix glycan: <http://purl.jp/bio/12/glyco/glycan#> .
<http://rdf.glycoinfo.org/glycan/G21381MC>
glycan:has_archetype <http://rdf.glycoinfo.org/glycan/G92954UT> .
¶ Archive graph
Archived entries are included in the archive graph.
URI : http://rdf.glytoucan.org/archive
RDF (turtle format)
@prefix rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> .
@prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> .
@prefix glycan: <http://purl.jp/bio/12/glyco/glycan#> .
@prefix glytoucan: <http://www.glytoucan.org/glyco/owl/glytoucan#> .
<http://rdf.glycoinfo.org/glycan/G68622UR>
rdf:type glycan:Saccharide ;
glytoucan:has_primary_id "G68622UR" ;
rdfs:comment "Duplication of WURCSs" ;
rdfs:seeAlso <https://glytoucan.org/Structures/Glycans/G88485AW> .